rs30517997 SNP Detail

Summary

• ID
  rs30517997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126403562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATTTATA TTTTCCGATG
  GTTTTGCGTG ACCCTGTGAA AAGGGACAGG ACCCAGAGGT TGACAAACTC TGATCTAGTA
  TTTCCAGCTC TACTGGGGTG GAAGCCGACC TAGAGAATAC AGAATTGTGA GAGGGCTGTT
  AAGAGATAAG GCCTTTGAGG AAGTGCTTTA AGATCAGGAA GAGATAGCTG TACTGGCATC
  R
  GGGCTACTGT GCTGAGAGAA AGGGCGAAGT CCGGTACCAC CCAAGGATGG AATGGGAAGT
  CTGAGCATTC CAAATAGTGT AGAACGAACT CTTCCTCCTT TAAGACCCAG CTCAGGTGGT
  ACCTCTCCTA TGATGTCACC TCTCTCTACC CAGAAGGGCC TCCCCCCTCC TTCAGTCTTT
  TGTCATTTGA ATGGCTTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45466856	mCV23467135	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A		A
ss46955591	NES10677940	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G		G	A	A	A		G	A	A	G		G
ss135837031	ENSMUSSNP7035942	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
ss320946670	CHEV_3_126312831	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30517997					SNP	G	G	G	A	G	A	G	A	G	A	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955591	NES10677940	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126403562 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			505 bp upstream
Rr584652	regulatory region 584652			516 bp distal
Rr584653	regulatory region 584653			15 bp distal
Rr584654	regulatory region 584654			990 bp proximal
Rr584655	regulatory region 584655			1564 bp proximal
Tssr35522	transcription start site region 35522			1949 bp downstream