rs30517541 SNP Detail

Summary

• ID
  rs30517541
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126419140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAATCCC ATACTGGAGA
  AGCCACAGGT TTGAGCAGGG CTTTTATGCG TCTACGTTCA TAAAAAGATG ACTCGGCCTT
  TTCTCTTTCT GTGAGAACAC ACCAAGCAAT GACTCCCATC CCCACAGTTC TGCTTTTAGA
  CTTGTAACTA AGATTTCAAT AGATGAAGTA GCAATTTCCA ATAGTTTTAG CATTGGTGTT
  W
  TAATTCGCGC ACGTGTCTAG CACGTTGACT TTTCATTTGA AAAACTGGAG CATATAGAAA
  ACAAACTCAG CTGAAGAAGG CAGGAAAGGG GCTCAGTTTA GCCATTGAAG GGGATTTGTA
  TTTGCTGAGA ATGGGCTTTT AGGTTGAACC AGCCTCTAGT TCCTCTTCGA TGCTTCCTTT
  GTGGTCTTTG TGACCAGACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46955879	NES10677210	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30517541					SNP	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955879	NES10677210	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126419140 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			389 bp upstream
Gm64675	predicted gene, 64675			1976 bp upstream
Rr584659	regulatory region 584659			within coordinates