rs30517538 SNP Detail

Summary

• ID
  rs30517538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126418988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTTGTTT CCTTAAAAAT
  AGCATCCTTT CATGTAAAGG CAAGTTGAAC ACGTGCTCTC CTTTGCACAT GTTTGGCCTG
  GCCCTTGGCT TCCCATTGTT GAGTCATGAA CAAAGTGAAT CTGTCAAATA ATCAGTTTAT
  GAAGAGGAAT TTATAGAATC CCATACTGGA GAAGCCACAG GTTTGAGCAG GGCTTTTATG
  Y
  GTCTACGTTC ATAAAAAGAT GACTCGGCCT TTTCTCTTTC TGTGAGAACA CACCAAGCAA
  TGACTCCCAT CCCCACAGTT CTGCTTTTAG ACTTGTAACT AAGATTTCAA TAGATGAAGT
  AGCAATTTCC AATAGTTTTA GCATTGGTGT TATAATTCGC GCACGTGTCT AGCACGTTGA
  CTTTTCATTT GAAAAACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955875	NES10677208	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30517538					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955875	NES10677208	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126418988 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			541 bp upstream
Gm64675	predicted gene, 64675			1824 bp upstream
Rr584659	regulatory region 584659			within coordinates