rs30517295 SNP Detail

Summary

• ID
  rs30517295
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126456546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATTATTT ACATTTCAGC
  AGACCACTTA GTTAAATGGT AGTTTAACCA GGTTTTTAGC CATGGTATGT GTGGCTCTGT
  TTGTTTATTT GTTTTTATTT GTTTGGTTGT TTTGCTACTC AATTTATTAT CATCTATTAA
  ATGGAGTAAA CTCTAGAAAC AATTTGAGAT GAGAGGTGTA CCTTGTCAAG AGCCTGAATT
  K
  TCCTGTGCTT AGCGGGACTT AGGATGCCTG TGCCATTTAT TGTATTTGGA TTGAAAATGA
  AGAATATAAA GATTTTTAGA TTTTTTAAAA TCTTGTATAC TGCAGTATCA TATATGATAA
  GACGATTGCA AAAGAAAGAG AAATAGCTTA AGCCGATGTG TCACTATCAG TAAAACGAGC
  ACTTAGTTAA CAGGAACCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46956235	NES10675443	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	G	G	G		G	G		T
ss135838350	ENSMUSSNP5892624	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T			G
ss320947096	CHEV_3_126365815	CHEVERUD	SCREENING_POP	f	SNP									G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30517295					SNP	G	T	T	G	G	G	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956235	NES10675443	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126456546 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			within coordinates
Rr397996	regulatory region 397996			682 bp downstream
Rr584671	regulatory region 584671			1305 bp distal
Rr584672	regulatory region 584672			529 bp distal
Rr584673	regulatory region 584673			358 bp proximal