rs30517270 SNP Detail

Summary

• ID
  rs30517270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116506469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTC TGCTAATGTA TTTCCAAAAG
  Y
  TCCCAACCAC TGTAGCCATT GCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45438847	mCV23407518	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss135671139	ENSMUSSNP7233925	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss320895936	CHEV_3_116415738	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30517270					SNP	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116506469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13739	CpG island 13739	311 bp distal
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr583764	regulatory region 583764	1559 bp distal
Rr583765	regulatory region 583765	600 bp distal
Rr583766	regulatory region 583766	403 bp distal
Rr583767	regulatory region 583767	181 bp distal
Rr583768	regulatory region 583768	within coordinates
Slc35a3	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	mRNA-UTR
Tssr35331	transcription start site region 35331	1036 bp upstream
Tssr35332	transcription start site region 35332	973 bp upstream
Tssr35333	transcription start site region 35333	955 bp upstream
Tssr35334	transcription start site region 35334	938 bp upstream
Tssr35335	transcription start site region 35335	580 bp upstream
Tssr35336	transcription start site region 35336	551 bp upstream
Tssr35337	transcription start site region 35337	310 bp upstream
Tssr35338	transcription start site region 35338	165 bp upstream
Tssr35339	transcription start site region 35339	97 bp upstream