rs30517081 SNP Detail

Summary

• ID
  rs30517081
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126403145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGTGCTT GTCCTTTTCT
  TACCTCAGGT CCACGTAGTC TCTGTCACTT TGGTGTTTGT AACGATTCAT TCCAATAGGA
  GTCCAGTTTC CATCTTGCTC TACAGCCCTT TTCAATAGCT TCCCCAGCAG ACTTGCTGGC
  TGACAGTTGT TACATTGTTA ACACATAAAC ACACACTCTA TTCAATCACT CCTGAGACCC
  Y
  ATGGCAGTGA CTTGTTCTGA GTAACTTGAC TACTTCCTGC CCTCGCAGTA GACAGTTTCT
  ATCCTCCAGT ACAGCGGCCT CCCTAAGGCT AAGACCCTCT AACCCAATTC CTCATGTGGT
  GGTGACCCCC CCCCGCCCCC ACCCCCCTAA CCATAAAATT ATTTTTATTG CTACTTCTTA
  ATTGACATTT TGCTACTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46955585	NES10678062	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30517081					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955585	NES10678062	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126403145 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			88 bp upstream
Rr584652	regulatory region 584652			99 bp distal
Rr584653	regulatory region 584653			within coordinates
Rr584654	regulatory region 584654			1407 bp proximal
Rr584655	regulatory region 584655			1981 bp proximal