rs30516926 SNP Detail

Summary

• ID
  rs30516926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83749996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAGTAAG GGGACAGCTG
  CTCAGAGGTT CAAAGCCCGA CGTGCCTCCA CAGCAGAATG AAGGGCAGGC ACCAGAAACA
  CTGTGTCCCC ATACCTATGT CACAACTACA TGTCTCGTTT CTGCCCTTTA CCATGAAGAC
  AGCACTCTGC CATGTCTTGC ACAAGGCTAA GGGACGCTAA GACATAGATG GCACCTGGTG
  Y
  CGACAAGGTA CCTCAGAAAA ACTTTCCCAG GCATCCAAAG GGCAGGAGAA GGGAGTGACC
  TAGGAAGCCA GAGGAGCCTT CTGGTGGCCA GAGCTGCTCA CTGGGAGACC TACAGGGCGC
  TTGGTACTGA ACAAACTCCC ACTAAACAGG TTCTGAGGTT AAAATTATAC CTGACATCGA
  CATGCCCCAA ACACTCACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45936971	mCV24606547	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss51352287	NES13741338	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C
ss133350193	ENSMUSSNP6362659	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30516926					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51352287	NES13741338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83749996 () rs orientation: forward

Symbol	Name	Function Class
Rr632937	regulatory region 632937	1232 bp proximal
Tex261	testis expressed gene 261	Intron