rs30516533 SNP Detail

Summary

• ID
  rs30516533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54633030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTAGAAG AACAGCCAGT
  GCTCTTAACT GCTGAACTGT CTCTCCAGCC TGGATTATTT TAACTCTTAT AATCCTATTT
  ATTTAGTTGT TTTGCCAAAG GCCCTGAAGT TAAGTTTATC TTTAAGTTGT CTTACAAACC
  GTGTGTGTGT GTGTTTTGCA ACAGAACCTT ACTATGTAGC TATGTAGCCC AGGGTAGCTT
  Y
  GTAGTTCTGC ATTAGATCCA AGCACTGGGA TTGCCAGAGC CACAGGCCCA ATAATATCTA
  GATTACTGAG TTGAGTAATT CTAATTCAGC ATTTTATTTA TTTTATTTTA TTTATTCTTT
  TTGCATTTTG AGTTTATTTT ACAATAGCAC TGTTCTGGAT GTGATACAAG GTTTGTGATT
  TTAGGGTTTG TTTTTTGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955776	NES10809077	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30516533					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955776	NES10809077	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54633030 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397673	regulatory region 397673			1583 bp downstream
Rr397674	regulatory region 397674			1068 bp downstream
Rr576833	regulatory region 576833			1137 bp distal
Supt20	SPT20 SAGA complex component			Intron
				Noncoding-Transcript-Variant