rs30516531 SNP Detail

Summary

• ID
  rs30516531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54631863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTGCTGA CTTCTGCTGT
  TGGGCTTTTC TTACTTGTTT TGCTCAGTTT CTTGTGGTAG GGACCAGACT CAGGGCCTCC
  TGCAGGTTGG CATGTGGCTC TACCACTGCA CTTCCTGTTT CAGTCAGTTT TGTTTTGAGT
  AGCTGCTGTC CAAGTGAGTA TAAGGTGAGA ATCTCCCTGG CTGACGGAGT AGGACAGCTT
  Y
  TCTGCATTTC TTTGAAAAAT CAGTATATCC AAATCCTTGG CCTATCTTCT TTTTTTTAAC
  TAAGGTTGTT TATTTTTGTG TTGTTCAATT GAAGACATGT ATACATACTC GATATGAGAA
  ATTCCTAGTA ATTCCTCCTG TTTTGGGTTA CTCTCTGGCT CTGGTCTGTC CTGTGCAGTT
  TTGTACATTC TGCTCATACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955774	NES10809248	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30516531					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955774	NES10809248	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54631863 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397673	regulatory region 397673			416 bp downstream
Rr397674	regulatory region 397674			within coordinates
Rr576833	regulatory region 576833			within coordinates
Supt20	SPT20 SAGA complex component			Intron
				Noncoding-Transcript-Variant