rs30516526 SNP Detail

Summary

• ID
  rs30516526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54630623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGGCAGT GGGAACAGGC
  AGCAGCAGAT ACTGCACATT GCCAGTCAGG ATGTAATTAA ATAGGAACAG CAGTAAATTG
  AAGTCTGGAG AGAAAGGGAG AAGTGTGCCT GGACTTTGAA TATGCTGTAG AATCATTTGG
  GAAACTAAGC ATACTTATTC CTGGGTCCCA CCTTGAGTAT CTCAGCTGAT GCTGAGAACT
  R
  CCCAGCCACC CTCTTGCCTA GCACTCCTGC AAGTCTTCAG TGGATGAAAC TCACCCTCTA
  GTAGGTTTCT CAGATGAGAC ATGTTGAAAA CTTTTCCTGT ATACTTAGCA CACTAAGGGG
  TTTGCTTTGC CGATAAGAGG TCTAGTTGTC TTTCTTACAC TTTTTAAAAA CAAATGTTGC
  TTGTTTCCTT TCTGTCCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955768	NES10809414	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30516526					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955768	NES10809414	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54630623 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397673	regulatory region 397673			523 bp upstream
Rr397674	regulatory region 397674			1039 bp upstream
Rr576833	regulatory region 576833			649 bp proximal
Supt20	SPT20 SAGA complex component			Intron
				Noncoding-Transcript-Variant