rs30516506 SNP Detail

Summary

• ID
  rs30516506
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126434725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAGGCTT ACTAACAGGC
  TAACCTCAGG TTGGAAATGA TTGTAATCCA GACAGTCATG CCTTTCCATT CTCTTATATG
  CTAATGAGAA AGCAAGCAGC TTTGCATCTG TTGCATTATG TGTCTTCCCG AGGAAATGTC
  ACATGGTACT AAGCATGGGG ACAAGGTTCA GCCACACATC ATCCACACCC TAAAACTCAC
  M
  CCTTACTGGG TGGCCTCCTC TTCCCACTTC AAAACCTTTG TAGAGTGAAA ATCACATTGA
  GCCTTAGAGC CTTCTTCCAT GTTACTTTCT CTGTTTCTTG CTAACTATTT ACCATTTTGG
  ATATTCAGTC ATAGGTAGGT AGGATTATTT AAATCTTCTA AATGTTTTTT TTAAATAAAT
  TAACTCCCTT ATGTGTGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46956069	NES10676432	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	C	A	C	C	C		A	C	C	A
ss135837706	ENSMUSSNP6045014	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					C
ss320946905	CHEV_3_126343994	CHEVERUD	SCREENING_POP	f	SNP										C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30516506					SNP	A	A	A	A	C	A	C	C	C	C	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956069	NES10676432	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126434725 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584664	regulatory region 584664			1225 bp distal
Rr584665	regulatory region 584665			within coordinates
Rr584666	regulatory region 584666			168 bp proximal