rs30516504 SNP Detail

Summary

• ID
  rs30516504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126434671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGTTTCTG CCTAGACGCT
  TGGTAGTGCA GCCGTCTTCT GTCTTGTTAC TTCCATGAAG GCTTACTAAC AGGCTAACCT
  CAGGTTGGAA ATGATTGTAA TCCAGACAGT CATGCCTTTC CATTCTCTTA TATGCTAATG
  AGAAAGCAAG CAGCTTTGCA TCTGTTGCAT TATGTGTCTT CCCGAGGAAA TGTCACATGG
  Y
  ACTAAGCATG GGGACAAGGT TCAGCCACAC ATCATCCACA CCCTAAAACT CACCCCTTAC
  TGGGTGGCCT CCTCTTCCCA CTTCAAAACC TTTGTAGAGT GAAAATCACA TTGAGCCTTA
  GAGCCTTCTT CCATGTTACT TTCTCTGTTT CTTGCTAACT ATTTACCATT TTGGATATTC
  AGTCATAGGT AGGTAGGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46956067	NES10676430	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C	C	T	T	T		C	T	T	C		T
ss135837697	ENSMUSSNP4502773	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss320946902	CHEV_3_126343940	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30516504					SNP	C	C	C	T	C	T	C	C	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956067	NES10676430	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126434671 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584664	regulatory region 584664			1171 bp distal
Rr584665	regulatory region 584665			within coordinates
Rr584666	regulatory region 584666			222 bp proximal