rs30516433 SNP Detail

Summary

• ID
  rs30516433
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126455470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTAACTAA CATTTTGCAG
  CTAAAAAAAA AAAAAAGAAG CCGAAGTGAC TTTCTACATC AATTCAAAAA GTTTTGAATA
  CCTGTTTTGC TCGTATACCA TTGCTAGTAT TTGAAAATTC GTTTAAAAAG TCAATACACT
  GATATAAAAT ATTGTTTGTC CTAATAACCC CAAACATCTG AAACCTTTGG CTTGTTTCTC
  Y
  GTGGTACAAA GTTCTAGCTT GCCCTCCGTG TGTGTGTGTG TGTGTGTGTG TGCATGTGTG
  AAACATATAA CTTAATTCTT CTTCTTACCC CATGTATTCT GTTTTATGTT GTCAGTTTTC
  TGTTAGTGAA ACACCAAAGC CTTGCACCCT GTAAAGAGGT CTACTTAGTT CCTGTTCCAT
  ATCTGTTTTG ATCTCTAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46956233	NES10675536	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		T	T		C
ss320947078	CHEV_3_126364739	CHEVERUD	SCREENING_POP	f	SNP						T			C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30516433					SNP	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956233	NES10675536	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126455470 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			558 bp upstream
Rr397996	regulatory region 397996			93 bp upstream
Rr584671	regulatory region 584671			229 bp distal
Rr584672	regulatory region 584672			41 bp proximal
Rr584673	regulatory region 584673			1434 bp proximal