rs30516431 SNP Detail

Summary

• ID
  rs30516431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126455109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTTCAG CTCGGTTTGC
  AGAACACTTG AATGAAAACT TCATGCACAG TGATAGTTAA GAATGCTATG TAGACTGAAC
  TGATGCGGGA TGGTCAAATT CCTACTTTCA AATGAAATTT AAAAAGGCCA AAGTAAAGGT
  CTCTGCCTGG TTTCTCCAAA GCAGAGCCTG AGAGAAAGAG GTTGTCTGAG AGAGCTGGAC
  R
  TTGGGTTGGA CCAGAGAAAC AGGAAAACTG ACGAGCTTGG CCTGTTCTGC ACGGCACCGA
  GGTTTTCCTG ACTACAAGGG TATGTCTGCA GGGCACAGAA AGGCAGCAGG GAACCCAACT
  GAAAGGCTTA CAGATTGAGA ATATGTGCAG GAACGGTAAA TGGTAACTAA CATTTTGCAG
  CTAAAAAAAA AAAAAAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46956231	NES10675533	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G		G	G		A
ss135838284	ENSMUSSNP4055518	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320947073	CHEV_3_126364378	CHEVERUD	SCREENING_POP	f	SNP							G			A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30516431					SNP	A	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956231	NES10675533	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126455109 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			919 bp upstream
Rr397996	regulatory region 397996			454 bp upstream
Rr584671	regulatory region 584671			within coordinates
Rr584672	regulatory region 584672			402 bp proximal
Rr584673	regulatory region 584673			1795 bp proximal