rs30516429 SNP Detail

Summary

• ID
  rs30516429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126454182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCTCCA AGCCCTCTGA
  GTAGGTTTCT TCCTGATTAT GAGTCATGCT GTGCTTGCTC TTTGTCACAA TCTCACTTCG
  TCCCCTTCAA AGTGGAAAAA CCTCTACACA CTCACAAGGC CATGCTCTAC TCCCTCACCT
  CGTCCTTGCT TTTGTTTTTT CTGTCTTGTC CCCACAGTGG TAAGCATATC CCTGTGTCGG
  R
  TGTTCCTTCC GTCATGTGCT GTTGCTTGCT CTTGGTGACT TCCACTCTTT GCCTACTGGG
  CTTTTCTGGG ATAGGTGTCT ACTTGGTATC ATTGTTGCCT CAGCATGGCC TATCCAGTGC
  ATGTAACACA GTCAGCAGTG AGTTAGGCTG GGTCTTAGAT GGCCAGGGTC CTGCCCACCA
  TGTCCTGTGC CCTCCAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46956229	NES10675531	PERLEGEN	MM_PANEL2	f	SNP		G	G	G		G	G		A
ss135838254	ENSMUSSNP463730	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss320947063	CHEV_3_126363451	CHEVERUD	SCREENING_POP	f	SNP					G			A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30516429					SNP	A	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956229	NES10675531	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126454182 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			1846 bp upstream
Gm43006	predicted gene 43006			1210 bp downstream
Rr397996	regulatory region 397996			1381 bp upstream
Rr584670	regulatory region 584670			1386 bp distal
Rr584671	regulatory region 584671			within coordinates
Rr584672	regulatory region 584672			1329 bp proximal