rs30516276 SNP Detail

Summary

• ID
  rs30516276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36117668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGATTCTC CTGAGCTCTG
  AAGGGGGGAG GGGCTAATAG AGAAATCACA TTTAGAGCTG AGTGTTCCAA GGTCTTTCTC
  TGCATAATAT CTGGCTGTGC ATCCCTGTGT TTATTCCCAT ATACTGCAGG AGGAAGTTTT
  TCTGATGATG GCTGAATAAG GCACTGATCT ATGAGCTTGG CAGAATATCA GTAGGAGTCA
  Y
  TTTATTAGTA CTGTGTTTTA AGATCTGTGG TATTTGATTT TACCATAGGT CTCTAGGCTA
  TCTAGTCTCT GATTCTTGGG CAACCAAGCA GTGTTGGGTA TGGGTTCTAC CTCATAGAGT
  GGGCCTTGTT CAAATCAGAC ATTGGTTTGC TACTCCTACT AGTTTGTGCG ACCATTGGCT
  TAGCATATTT TGCAAGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45438676	mCV22322143	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss134777604	ENSMUSSNP5958798	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30516276					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36117668 () rs orientation: forward

Symbol	Name	Function Class
Rr397642	regulatory region 397642	1027 bp upstream
Rr575304	regulatory region 575304	1030 bp proximal
Rr575305	regulatory region 575305	1662 bp proximal
Rr575306	regulatory region 575306	1842 bp proximal
Rr575307	regulatory region 575307	1970 bp proximal