rs30516273 SNP Detail

Summary

• ID
  rs30516273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126402446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACAGCCT CATACAACAA
  CAACAATAAT ACAATAACAA CAACAACAAC AAGGAGAAGA ACAACAACAA TATCAATGGC
  AACAGAAATA CCATTTTACC TTTTCCATAA AGGCCTTCAG AAGATAATAA GTATTTGGAA
  TTTTTAATAG TAAAGTGTTT TTCCCCTATA GTTTTCAAGA CATTTTATTA ATATGATGTA
  Y
  ACACCCTGAA AAGTTAAGAA TAATTTAGAT AAAGGGGGCT TTTTAAAAAC TAGGGCTGGA
  AGGATGTGTC AACAGGTAAG AGCACTTGGT GCTCTTGCAG AGGACTGGAA TTCGGGGCTC
  AGTGCTCACA CTGGGTGGCT CCCCTGCCTG TTTCAGGGGA TTTGAGAGTC TGTTCTACAT
  TCATGGCACC TGCATGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955577	NES10678092	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	C	C	C		T	C	C	C		T
ss320946664	CHEV_3_126311715	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30516273					SNP	T	T	C	T	C	T	C	C	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955577	NES10678092	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126402446 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			within coordinates
Rr584652	regulatory region 584652			390 bp proximal
Rr584653	regulatory region 584653			601 bp proximal
Tssr31576	transcription start site region 31576			1676 bp downstream