rs30516271 SNP Detail

Summary

• ID
  rs30516271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126402387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTGTGT AAAGGTGAAT
  GAAGAGAAGC AATTGCATGA AGCTGTCTTC CAGTCTTCTT ACACAGCCTC ATACAACAAC
  AACAATAATA CAATAACAAC AACAACAACA AGGAGAAGAA CAACAACAAT ATCAATGGCA
  ACAGAAATAC CATTTTACCT TTTCCATAAA GGCCTTCAGA AGATAATAAG TATTTGGAAT
  Y
  TTTAATAGTA AAGTGTTTTT CCCCTATAGT TTTCAAGACA TTTTATTAAT ATGATGTACA
  CACCCTGAAA AGTTAAGAAT AATTTAGATA AAGGGGGCTT TTTAAAAACT AGGGCTGGAA
  GGATGTGTCA ACAGGTAAGA GCACTTGGTG CTCTTGCAGA GGACTGGAAT TCGGGGCTCA
  GTGCTCACAC TGGGTGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955575	NES10678091	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	T	T	T		C	T	T	T		C
ss320946663	CHEV_3_126311656	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30516271					SNP	C	C	T	C	T	C	T	T	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955575	NES10678091	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126402387 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			within coordinates
Rr584652	regulatory region 584652			449 bp proximal
Rr584653	regulatory region 584653			660 bp proximal
Tssr31576	transcription start site region 31576			1617 bp downstream