rs30516265 SNP Detail

Summary

• ID
  rs30516265
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126401945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTTTTT ATTTCATGAA
  TTTTGGTATA CACAGTTACG TATATTTAAT TTTGAAACAG TAAACAAGTG ACTGTAAGTA
  ATCAAAACTC TCCGTGGCTG GGCTGTTTCC TGTACTTCTG AAGCTGTCCG TGAGTTCCTG
  GCTCAAGCTT ATTCCTTCCC AGGCCAAGAG TCAGTTACTG TCCCTGAAGA TTTTTGGAGT
  S
  AAACTCCTTA TCAGCCATCC AGCTTGTTTT GAATTTAACT GGAAGATCTT CAGTAATGGA
  AAACTCACAC ACTCATTATA TAGGTTAATT GTAATTTATT TTGTGTTGCA CAATATAGAC
  TCACAGACCA ACAGGCATTA TTTTCTATGT ATTAATGAAT TATTTTGGCC TGGCAAGATG
  TCTGGGTGGG GAAAGGTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955569	NES10678179	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30516265					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955569	NES10678179	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126401945 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			within coordinates
Rr584652	regulatory region 584652			891 bp proximal
Rr584653	regulatory region 584653			1102 bp proximal
Tssr31576	transcription start site region 31576			1175 bp downstream