rs30516137 SNP Detail

Summary

• ID
  rs30516137
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83574883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACTGTCA ATCTGGATGA
  TCCTCCTTTG TGTTTACAAT CTTTGCAAAA GTAAACAGAT GTTGGCCTGT TAACATATGG
  CTTTTCTATT TACAATTTGC ATTTTCTATT ATTGACTTTT AATGATGAGA GAATATTTAT
  AATTGTAAGT ATACATGGTT CTAAAATTGA CTAAAATATG AGCTATGTAA ATGTAAATAT
  R
  ATGTTTGCTT TTGTACAAAA TGACTATATA CATTTGTGAA AGTAAATACT ATCAGCCAGA
  AGTTTTAACT AGCAGTCATC TGTCCATTTA TTCACTCATG AAAAAATAAC ACTGATTTTT
  CTTTCAGCTT ACACAGATCT AAGTTGCTGT GAATATTACT AACAGAGAAT TCGAGGAAAC
  TTCAGAAATT ACAAACTAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45937350	mCV22812580	ABI	CRAMUS_MOUSE	f	SNP		G	A				A		A
ss51353419	NES13744284	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	A		G	A	G		G	A	A	G		G
ss133348838	ENSMUSSNP5745094	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss321844681	CHEV_6_83547895	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30516137					SNP	G	G	A	G	A	A	A	G	A	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51353419	NES13744284	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83574883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17607	CpG island 17607	1128 bp proximal
Rr632898	regulatory region 632898	154 bp proximal
Rr632899	regulatory region 632899	786 bp proximal
Rr632900	regulatory region 632900	940 bp proximal
Rr632901	regulatory region 632901	1839 bp proximal