rs30515786 SNP Detail

Summary

• ID
  rs30515786
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126434280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCCTTT GCCTGTCCTG
  CCCATCGCCT GTTTGCCCTC TGGTGCGCAC AAGCAACATC CTTATTTTGA CTATCACAAG
  CCAACTGTGT CACAGGCTGA GTGTGTTAGC ACAAGGGACT CTGCGCTTTC CATTCCAAGA
  ACAGGGGCTT GCTATCATAT TTCACCCACA TTTGTTTTGG TCCGAGATAG TTTTCCTACT
  R
  TGTTACACTC ATTACCCAGA GCCAGCTCTC ACCTGTGCTT GCTCTGTGTT GGATGGTGAA
  ACAATTTTGA GTGAACAGCA AACACCTGAA TAAGTATAGC GATGAATAAA ACCCATTGTC
  ATATTTTAAT CCGCTAAAGT AGTCATGTTA CAAATGCTTT ATTGTCTGTG TACACTGGAA
  CTTCAAAGAC TTCGTTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46956059	NES10676422	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	G	G	G		A	G	G	A
ss135837691	ENSMUSSNP2297852	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G
ss320946900	CHEV_3_126343549	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30515786					SNP	A	A	G	A	G	A	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956059	NES10676422	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126434280 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			1774 bp distal
Rr584664	regulatory region 584664			780 bp distal
Rr584665	regulatory region 584665			within coordinates
Rr584666	regulatory region 584666			613 bp proximal