rs30515784 SNP Detail

Summary

• ID
  rs30515784
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126434251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTTTCTA TTCAGCATCC
  CAGTAATGTG CCCTCCTTTG CCTGTCCTGC CCATCGCCTG TTTGCCCTCT GGTGCGCACA
  AGCAACATCC TTATTTTGAC TATCACAAGC CAACTGTGTC ACAGGCTGAG TGTGTTAGCA
  CAAGGGACTC TGCGCTTTCC ATTCCAAGAA CAGGGGCTTG CTATCATATT TCACCCACAT
  K
  TGTTTTGGTC CGAGATAGTT TTCCTACTGT GTTACACTCA TTACCCAGAG CCAGCTCTCA
  CCTGTGCTTG CTCTGTGTTG GATGGTGAAA CAATTTTGAG TGAACAGCAA ACACCTGAAT
  AAGTATAGCG ATGAATAAAA CCCATTGTCA TATTTTAATC CGCTAAAGTA GTCATGTTAC
  AAATGCTTTA TTGTCTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46956057	NES10676421	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	G	G	T	T	T		G	T	T	G		G
ss135837688	ENSMUSSNP1124512	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						T
ss320946899	CHEV_3_126343520	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30515784					SNP	G	G	T	G	T	G	G	T	T	T	T	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956057	NES10676421	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126434251 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			1745 bp distal
Rr584664	regulatory region 584664			751 bp distal
Rr584665	regulatory region 584665			9 bp proximal
Rr584666	regulatory region 584666			642 bp proximal