rs30515582 SNP Detail

Summary

• ID
  rs30515582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54630412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTTTAT TAACATCAGT
  AGCTGCCAGT TATTCTAATT ATAGCTGTTT TGAATGTAGG TGTCCATCTT ACAGAGTGTC
  ACACAGCCAG ACGGTGAATG GCAGTCAGTC GCGTGACTCC ACCTCACAGT GTCTTTTCTG
  ACCAGCCTAT TATCTTCTGC TTGTAGAAAT GGATTGCTGT TGTAATAGAT CTGTCTGCGT
  Y
  GTTGGGAAGT ATTAGGCAGT GGGAACAGGC AGCAGCAGAT ACTGCACATT GCCAGTCAGG
  ATGTAATTAA ATAGGAACAG CAGTAAATTG AAGTCTGGAG AGAAAGGGAG AAGTGTGCCT
  GGACTTTGAA TATGCTGTAG AATCATTTGG GAAACTAAGC ATACTTATTC CTGGGTCCCA
  CCTTGAGTAT CTCAGCTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955764	NES10809412	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	C	T	T	T	C		T	C	C	T		T
ss320772424	CHEV_3_54526913	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30515582					SNP	T	T	C	C	T	C	T	T	T	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955764	NES10809412	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54630412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397673	regulatory region 397673			734 bp upstream
Rr397674	regulatory region 397674			1250 bp upstream
Rr576833	regulatory region 576833			860 bp proximal
Supt20	SPT20 SAGA complex component			Intron
				Noncoding-Transcript-Variant