rs30515575 SNP Detail

Summary

• ID
  rs30515575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54629799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGTTTA ATAATAAGCT
  GTAAATCTAG ATACTATTAA CTTGAATCAG GAAGATTTGT ATTTGAAAAT ATACACCAAA
  AAGCAGTAGG ACTTAAAAAT AACTTCTGGG TGTCGCCTGC TGCAGGGCAG GCAGCTTGCT
  TGGTTTTGCT TCTGTGTGGA AGCCAGACAG AGGCTGATGC TGATCCGTCA TCACGCCTGC
  Y
  TTCTCTTGCT GTCTTCGTCT TTCTTCAGAA CCTAAGATTG CCCGACTTCT AGTAAATTAT
  CCATGAATGT TTTTAAGGAA ATGTAAATAC TTCACATGAA AACAATGGAA AGGCAGCTAA
  TTCTTGTTTA AATCCTGAAT AGCTTCCTGG TGGTTCACTC ATTTTTAACA CCCAGCAGCA
  ACAGCAGCAG ACGCAGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955756	NES10809408	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30515575					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955756	NES10809408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54629799 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397673	regulatory region 397673			1347 bp upstream
Rr397674	regulatory region 397674			1863 bp upstream
Rr576833	regulatory region 576833			1473 bp proximal
Supt20	SPT20 SAGA complex component			Intron
				Noncoding-Transcript-Variant