rs30515521 SNP Detail

Summary

• ID
  rs30515521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126418311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGTGTC AATCATGAAG
  GTGCCAGTTT TAATGCCCAA CCTTCTGGGC TGCAGCTGGT CCTGCACAGG AAGCCACTTT
  GGCATTAATA TTTCAGGTTT CCTCTCTCCT GCCATCAACC CAGAGTCCTG AACAATTGGC
  ACTGTTCAAT CGACATGCTC ATGAATATCC GTGTATGCTA CATATTCAGA AAAGTTACTA
  Y
  GGAATGATAA AATCTGTGAA ATCTCTGCAC CCAAGTAGAA GGGCAGCCTA GCATATTCTC
  GGATATTCTC TAACTAGAGA ATGATGCAGG GTTCTGCAAG TTTTAAAGGC ATTCTGCACT
  AAACACTTCT GTAACTTTTC CTCTGGAGTC CACTCTGAAG TAAGAATCAG CAGAGGGTTT
  TCCATGCTCA TTTAAAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45559642	mCV23466493	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		T
ss46955857	NES10677198	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C		T	T	T	T		C	T	T	T		C
ss135837333	ENSMUSSNP1318742	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss320946777	CHEV_3_126327580	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30515521					SNP	C	C	C	T	C	T	C	T	T	T	T	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955857	NES10677198	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126418311 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			1218 bp upstream
Gm64675	predicted gene, 64675			1147 bp upstream
Rr584659	regulatory region 584659			539 bp proximal