rs30515519 SNP Detail

Summary

• ID
  rs30515519
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126418232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTATTTT TCTTTTTACT
  CAATGAGCCC ATGCATTTCA AGAAATGTGG CCCTAGTAGA GTATGTTCTC TTGTCGGTTT
  TCTGGTGTCA ATCATGAAGG TGCCAGTTTT AATGCCCAAC CTTCTGGGCT GCAGCTGGTC
  CTGCACAGGA AGCCACTTTG GCATTAATAT TTCAGGTTTC CTCTCTCCTG CCATCAACCC
  R
  GAGTCCTGAA CAATTGGCAC TGTTCAATCG ACATGCTCAT GAATATCCGT GTATGCTACA
  TATTCAGAAA AGTTACTATG GAATGATAAA ATCTGTGAAA TCTCTGCACC CAAGTAGAAG
  GGCAGCCTAG CATATTCTCG GATATTCTCT AACTAGAGAA TGATGCAGGG TTCTGCAAGT
  TTTAAAGGCA TTCTGCACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45487584	mCV23466500	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		A
ss46955855	NES10677197	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G		G	A	A	A		G	A	A	G		G
ss135837330	ENSMUSSNP1733143	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss320946776	CHEV_3_126327501	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30515519					SNP	G	G	G	A	G	A	G	A	G	A	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955855	NES10677197	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126418232 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			1297 bp upstream
Gm64675	predicted gene, 64675			1068 bp upstream
Rr584659	regulatory region 584659			618 bp proximal