rs30515517 SNP Detail

Summary

• ID
  rs30515517
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126418173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTCTTTA GAGACATTGG
  GAGATGTTAG CTGGGCTGGT TATCTTAGCT CTTCCCCTTT CCTTATTTTT CTTTTTACTC
  AATGAGCCCA TGCATTTCAA GAAATGTGGC CCTAGTAGAG TATGTTCTCT TGTCGGTTTT
  CTGGTGTCAA TCATGAAGGT GCCAGTTTTA ATGCCCAACC TTCTGGGCTG CAGCTGGTCC
  K
  GCACAGGAAG CCACTTTGGC ATTAATATTT CAGGTTTCCT CTCTCCTGCC ATCAACCCAG
  AGTCCTGAAC AATTGGCACT GTTCAATCGA CATGCTCATG AATATCCGTG TATGCTACAT
  ATTCAGAAAA GTTACTATGG AATGATAAAA TCTGTGAAAT CTCTGCACCC AAGTAGAAGG
  GCAGCCTAGC ATATTCTCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955853	NES10677196	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30515517					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955853	NES10677196	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126418173 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			1356 bp upstream
Gm64675	predicted gene, 64675			1009 bp upstream
Rr584659	regulatory region 584659			677 bp proximal