rs30515313 SNP Detail

Summary

• ID
  rs30515313
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126401932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGGGATT TGCATTTTTT
  TTTATTTCAT GAATTTTGGT ATACACAGTT ACGTATATTT AATTTTGAAA CAGTAAACAA
  GTGACTGTAA GTAATCAAAA CTCTCCGTGG CTGGGCTGTT TCCTGTACTT CTGAAGCTGT
  CCGTGAGTTC CTGGCTCAAG CTTATTCCTT CCCAGGCCAA GAGTCAGTTA CTGTCCCTGA
  R
  GATTTTTGGA GTCAAACTCC TTATCAGCCA TCCAGCTTGT TTTGAATTTA ACTGGAAGAT
  CTTCAGTAAT GGAAAACTCA CACACTCATT ATATAGGTTA ATTGTAATTT ATTTTGTGTT
  GCACAATATA GACTCACAGA CCAACAGGCA TTATTTTCTA TGTATTAATG AATTATTTTG
  GCCTGGCAAG ATGTCTGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955567	NES10678178	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	A	A	A	A		G	A	A	G		A
ss135837016	ENSMUSSNP5555774	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
ss320946659	CHEV_3_126311201	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30515313					SNP	G	G	G	A	A	A	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955567	NES10678178	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126401932 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			within coordinates
Rr584652	regulatory region 584652			904 bp proximal
Rr584653	regulatory region 584653			1115 bp proximal
Tssr31576	transcription start site region 31576			1162 bp downstream