rs30515075 SNP Detail

Summary

• ID
  rs30515075
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126405892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACAAAG GACTTGAAAA
  TAGAGTATTT CTTTTTAAAG TCAAGTGTTA TGGAGTGTTA AAAATAATTA GAGTATTTTT
  TTTAAAGTCA AGTGTTATGG AGTGTTACTG GAGATTGCAG TGTATGTTGT GACTGTTGTG
  AAAATTATTG GAGGGGTCTA CTTAAAGCCA AAAGTGACTA GGACATCTAA CCAATAGGAT
  K
  CCACTCAACA CCAGATTCTT GTGTCTAAAA GACTAGCACT GGTCTGTACA GTTACGTAGA
  GGAATAAATG TTTTGCAGAG TCTGTTTTCC TGTAGTTTTG CTAATACATG TTTAGGGACC
  CAGAGCCTTT AATGTCACAT CTGTGCATAC TGCACTCAAC TGCTGCCTTC TTCTCTCTCT
  CTTTTTAAGA AACTGAGAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955655	NES10677984	PERLEGEN	MM_PANEL2	f	SNP	T		T	G	T	G	T	G	G	G	G		T		G	G	G		G
ss135837082	ENSMUSSNP2377183	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						G					T
ss320946688	CHEV_3_126315161	CHEVERUD	SCREENING_POP	f	SNP												G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30515075					SNP	T	T	T	G	T	G	T	G	G	G	G	G	T	T	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955655	NES10677984	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126405892 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr397995	regulatory region 397995			1254 bp upstream
Rr584654	regulatory region 584654			1024 bp distal
Rr584655	regulatory region 584655			within coordinates
Rr584656	regulatory region 584656			455 bp proximal
Tssr35522	transcription start site region 35522			351 bp upstream