rs30514850 SNP Detail

Summary

• ID
  rs30514850
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126434114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCATTCT CCACGTGAGC
  TTCTGTTTTC AGTTCTCTGC ACTGCCCTCA GATGTCAAGA CTTAACCAGG CCTGGCTCTC
  TAGCACACAC CTAGGAGCGA AGAATAAAAT AAGCAGCTTA GCTCCGAGTT TCTAAGTGAA
  TTTTCTATTC AGCATCCCAG TAATGTGCCC TCCTTTGCCT GTCCTGCCCA TCGCCTGTTT
  S
  CCCTCTGGTG CGCACAAGCA ACATCCTTAT TTTGACTATC ACAAGCCAAC TGTGTCACAG
  GCTGAGTGTG TTAGCACAAG GGACTCTGCG CTTTCCATTC CAAGAACAGG GGCTTGCTAT
  CATATTTCAC CCACATTTGT TTTGGTCCGA GATAGTTTTC CTACTGTGTT ACACTCATTA
  CCCAGAGCCA GCTCTCACCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46956053	NES10676417	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	G	C	C	G	G	G		C	G	G	C		G
ss135837685	ENSMUSSNP3292172	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						G
ss320946898	CHEV_3_126343383	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30514850					SNP	C	C	G	C	G	C	C	G	G	G	G	C	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956053	NES10676417	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126434114 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			1608 bp distal
Rr584664	regulatory region 584664			614 bp distal
Rr584665	regulatory region 584665			146 bp proximal
Rr584666	regulatory region 584666			779 bp proximal