rs30514846 SNP Detail

Summary

• ID
  rs30514846
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126433352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGTATAG TAACCTTGTG
  ATAATCAAAG TAAGGCTGTT GTTAAAGCTG TTGTCTGTGA AGATCAGACA GGAACTAGGA
  GAGGGGAAGG GGAGAGGGAA GGAATGGAAG TGAAATCAAA CTGGAGAGAG GTCTTTTTGG
  AGGGGTTGAG ATGTGTACAC CTTGGTATTT TTCAGTTGTG TGAATGCTGT TAGCAAAGAG
  R
  CAGGGAAGGA GTTTGGTGCA AATCTATTGC TTAGGGAACA TTCCGTCCTT CTGTATTAGA
  TCCATCAAGG AATGCAAGGG AACTTCTGTT TTGTTTTAAA TAGAACTCAG AGGTTGAAGT
  GCTCTCCCAG TATGACCGTC TCACTTGCTT TGCTCTAAGG TGATTCTCTT CTCAGTTCTG
  TTCAGTGACA CCCAATGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45441865	mCV23465818	ABI	CRAMUS_MOUSE	f	SNP	G	G	G						A
ss46956049	NES10676495	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G	G	A	A	A		G	A	A	G		A
ss135837670	ENSMUSSNP6154413	ENSEMBL	ENSEMBL_Sanger	f	SNP			G						A
ss320946893	CHEV_3_126342621	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30514846					SNP	G	G	G	A	G	A	G	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956049	NES10676495	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126433352 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			846 bp distal
Rr584664	regulatory region 584664			within coordinates
Rr584665	regulatory region 584665			908 bp proximal
Rr584666	regulatory region 584666			1541 bp proximal