rs30514648 SNP Detail

Summary

• ID
  rs30514648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5539010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTCCCTCC TTTCTTTCTC TTCTTCAAAC AAGGTGGTAG
  TCTGTAGCTC AGGGTATTGT GGAACTCACT ATGTAATCCA AGATTCCTCA AATTCGAAAC
  R
  ATCCCCTTGC CTCAACAGCC TAATCCTGGG CTTGCCAGTG AGCCCATAAC CCTGCGGTAG
  CCCTTCTTGC TCCTAGCTCC TTCCACAGTT CAGCTGGTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45935262	mCV25358853	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss132937710	ENSMUSSNP5228822	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss321729478	CHEV_6_5489010	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30514648					SNP	G	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5539010 () rs orientation: forward

Symbol	Name	Function Class
D6Mit179	DNA segment, Chr 6, Massachusetts Institute of Technology 179	1383 bp proximal
Rr407129	regulatory region 407129	343 bp distal
Rr626156	regulatory region 626156	1320 bp proximal