rs30514528 SNP Detail

Summary

• ID
  rs30514528
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52947989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTCCAGA CTCTGCCAAA
  TGTCTCCCAG GAACTATTCT TTCCTCTTCT CAAGACTATT GTGATAAACT TAATGTGTAT
  TACATCGCTT TCCTGGGAGG CTCATTACCT GTATCCTATT CCTACAAAGG AAAGGCTTGG
  AATCAATCAC TTAAAACCTT TCAAACAATC CTGAAACAAC CTGTCTCCAG CTGATGCCGC
  Y
  CAATTCAATG GTGCACTCGA AATTTTATTA TGAAATATAT TCCTACCCAG TTATTACTTC
  CAGCTGCTTT GAAAAAGGCA CATCACAAAA ACTGCATCTA GGCAAGTATG TACTTCAAAA
  GTTGCTGGTC CCAGATGGCA GCTTCCTAAA ATAACTGTCC TCTGTGGAGA CTCCAGAGGT
  CAGTCAGTCA CCCACAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45438369	mCV23032410	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss135180728	ENSMUSSNP4622892	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30514528					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52947989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13160	CpG island 13160	520 bp proximal
Gm42901	predicted gene 42901	within coordinates
Lhfpl6	LHFPL tetraspan subfamily member 6	979 bp upstream
Rr576626	regulatory region 576626	67 bp proximal
Rr576627	regulatory region 576627	871 bp proximal
Rr576628	regulatory region 576628	1026 bp proximal
Rr576629	regulatory region 576629	1570 bp proximal
Rr576630	regulatory region 576630	1585 bp proximal
Rr576631	regulatory region 576631	1887 bp proximal
Tssr29102	transcription start site region 29102	949 bp upstream
Tssr29103	transcription start site region 29103	1062 bp upstream