rs30514521 SNP Detail

Summary

• ID
  rs30514521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54629369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTGCTA GTAAAGAAGT
  CCCGAGCATG GACAATGGCA GATTTAGTGG GTTCTGTTTT CTTAACCAGA GGATTGCTGT
  TCTTAAATTT AACTTGAATT CAAAATAAGA GCAACTTAGT CTCCATGTAA AGGCTCTTTG
  TTTTCATCCC TAGAACTTCT TGTTATATTA AATGGTAATT GTAGGGCTAT TGGCAAGACT
  Y
  GAACAAATTT AAGGGCTGGG TTGTCTTACA TACATTTCTG AATTGTACCC TTTTAACTTT
  TGAGACAGGG ACAGCTTGTG AAGTTCAGGT TACCTTTGAA CTCTGCCTTC TCTTGCCTCA
  GCCTACCAAG TGCTAGGAAT ACTAGCACTA CACTGTGTCC TTATGCCCTG TTAGTTTGTT
  CAGTTCATAG CACATGCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955752	NES10809550	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30514521					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955752	NES10809550	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54629369 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397673	regulatory region 397673			1777 bp upstream
Rr576833	regulatory region 576833			1903 bp proximal
Supt20	SPT20 SAGA complex component			Intron
				Noncoding-Transcript-Variant