rs30514418 SNP Detail

Summary

• ID
  rs30514418
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17750992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTGTTTC TTAATAATTT
  GAAAATATTT TAAAATTCAT TTAATGGTGC ATTTGGAGTT CTTGTCATCC AAGAAACAGA
  TCATCCCATG GCACAGATCC CCCACTTTTA TTTTAGTAAT GGAATTTTGT TGATTTCAGA
  CCCTAGGTGA GGACAAAAAT ATTTATACTG TGTTTTAAAG GAAAATGATT GTGGTTACTG
  R
  CAGTTGAAAT CCATTGTTGG GCCTTATACT AGGGTCTCTT CCATTGTTTG GCCTGTTTTT
  CCGAGACGAC ACAGCCTTTT CTTTCACCAT CAAACCTTAT CTTTTGATAG TCTCACCCGT
  GTGCTATGTG GTATATTTGA AAACTGCTCT TGGTTTCCAT AGCTACCGTT TTGGAACAGA
  ATTGAACACT GCTCAGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45937236	mCV22806949	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss47815184	NES11712077	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30514418					SNP	G	G	A	A	A	A	A	A	A	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815184	NES11712077	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17750992 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr626853	regulatory region 626853			1767 bp distal
Rr626854	regulatory region 626854			163 bp distal
Rr626855	regulatory region 626855			within coordinates
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr1786	transcription start site region 1786			1890 bp downstream
Tssr55095	transcription start site region 55095			1971 bp downstream
Tssr55096	transcription start site region 55096			1842 bp downstream
Tssr55097	transcription start site region 55097			1728 bp downstream
Tssr55098	transcription start site region 55098			1421 bp downstream