rs30514302 SNP Detail

Summary

• ID
  rs30514302
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126401683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACCAGTG AGGAAAGGGA
  GACTTTTGTT TGTTTGTTTG TTTGTAGTTC CTTTTACAAC ATTAGTATTG AGTGTGTCAG
  ACTCATCCAA AAGAATGGGG CAATTAAAAG GAAATAAAAA GTTATAATCA ATGTACATTG
  TAAAAATAGG TGTGTAGCAG GAACTGGACA GGTATCCAGA TGACACAGGA TGATAATATT
  S
  GTTAACAGTT AATCCTTCTA CAGAAGGCTC TTATCTGTTT TTAGATTATG TAGGGATTTG
  CATTTTTTTT TATTTCATGA ATTTTGGTAT ACACAGTTAC GTATATTTAA TTTTGAAACA
  GTAAACAAGT GACTGTAAGT AATCAAAACT CTCCGTGGCT GGGCTGTTTC CTGTACTTCT
  GAAGCTGTCC GTGAGTTCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45518129	mCV23467159	ABI	CRAMUS_MOUSE	f	SNP		C					G		G
ss46955555	NES10678172	PERLEGEN	MM_PANEL2	f	SNP	C		C	G	C	G		G	G	G	G		C	G	G	G		G
ss135837007	ENSMUSSNP3947734	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							G
ss320946656	CHEV_3_126310952	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30514302					SNP	C	C	C	G	C	G	G	G	G	G	G	G	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955555	NES10678172	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126401683 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			within coordinates
Rr584652	regulatory region 584652			1153 bp proximal
Rr584653	regulatory region 584653			1364 bp proximal
Tssr31576	transcription start site region 31576			913 bp downstream