rs30514243 SNP Detail

Summary

• ID
  rs30514243
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126405751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTGATCC CGAGATTTAT
  AGCCCTGAGT CATTAGGGGT AAACAGCTGA TAAGAGAGCC ACAGCAAACT GCTTATCAAC
  CCCTCATTCT GTTTTATGTA GCCTTGGGGC AAAATACAAA CCCCATAAGA GCCACTAAGT
  AAAAAACAAA GGACTTGAAA ATAGAGTATT TCTTTTTAAA GTCAAGTGTT ATGGAGTGTT
  R
  AAAATAATTA GAGTATTTTT TTTAAAGTCA AGTGTTATGG AGTGTTACTG GAGATTGCAG
  TGTATGTTGT GACTGTTGTG AAAATTATTG GAGGGGTCTA CTTAAAGCCA AAAGTGACTA
  GGACATCTAA CCAATAGGAT GCCACTCAAC ACCAGATTCT TGTGTCTAAA AGACTAGCAC
  TGGTCTGTAC AGTTACGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46955653	NES10677983	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30514243					SNP	A	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955653	NES10677983	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126405751 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr397995	regulatory region 397995			1395 bp upstream
Rr584654	regulatory region 584654			883 bp distal
Rr584655	regulatory region 584655			within coordinates
Rr584656	regulatory region 584656			596 bp proximal
Tssr35522	transcription start site region 35522			210 bp upstream