rs30514241 SNP Detail

Summary

• ID
  rs30514241
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126405616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGCCAGT GAATGGTTTG
  GTGGTCATGA AAGCCTGCAG AGCCCGATGA AGGGAGTTGG AATTCTTTTC ACCCTCTGAG
  AGTGAATCAT GAAGTGGCAG GCTCTGTGGG AACGAAGGAA GGAAGGAAGG AAGGAAGGTT
  GATCCCGAGA TTTATAGCCC TGAGTCATTA GGGGTAAACA GCTGATAAGA GAGCCACAGC
  W
  AACTGCTTAT CAACCCCTCA TTCTGTTTTA TGTAGCCTTG GGGCAAAATA CAAACCCCAT
  AAGAGCCACT AAGTAAAAAA CAAAGGACTT GAAAATAGAG TATTTCTTTT TAAAGTCAAG
  TGTTATGGAG TGTTAAAAAT AATTAGAGTA TTTTTTTTAA AGTCAAGTGT TATGGAGTGT
  TACTGGAGAT TGCAGTGTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46955651	NES10677982	PERLEGEN	MM_PANEL2	f	SNP	T		T	A	T	A	T	A	A	A		T		A	A	T
ss135837076	ENSMUSSNP960674	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					A					T
ss320946686	CHEV_3_126314885	CHEVERUD	SCREENING_POP	f	SNP											A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30514241					SNP	T	T	T	A	T	A	T	A	A	A	A	T	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955651	NES10677982	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126405616 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr397995	regulatory region 397995			1530 bp upstream
Rr584654	regulatory region 584654			748 bp distal
Rr584655	regulatory region 584655			within coordinates
Rr584656	regulatory region 584656			731 bp proximal
Tssr35522	transcription start site region 35522			75 bp upstream