rs30514237 SNP Detail

Summary

• ID
  rs30514237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126405561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCAACAG ATAGGACATT
  ACGAGAAACT ACTCGTGAGG AACAATCAAA TCAGAAAGTG CCAGTGAATG GTTTGGTGGT
  CATGAAAGCC TGCAGAGCCC GATGAAGGGA GTTGGAATTC TTTTCACCCT CTGAGAGTGA
  ATCATGAAGT GGCAGGCTCT GTGGGAACGA AGGAAGGAAG GAAGGAAGGA AGGTTGATCC
  Y
  GAGATTTATA GCCCTGAGTC ATTAGGGGTA AACAGCTGAT AAGAGAGCCA CAGCAAACTG
  CTTATCAACC CCTCATTCTG TTTTATGTAG CCTTGGGGCA AAATACAAAC CCCATAAGAG
  CCACTAAGTA AAAAACAAAG GACTTGAAAA TAGAGTATTT CTTTTTAAAG TCAAGTGTTA
  TGGAGTGTTA AAAATAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46955647	NES10677980	PERLEGEN	MM_PANEL2	f	SNP	T			C	C	C	C	C	C		T		C	C	T
ss135837073	ENSMUSSNP915865	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				C					T
ss320946685	CHEV_3_126314830	CHEVERUD	SCREENING_POP	f	SNP										C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30514237					SNP	T	T	T	C	C	C	C	C	C	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955647	NES10677980	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126405561 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr397995	regulatory region 397995			1585 bp upstream
Rr584654	regulatory region 584654			693 bp distal
Rr584655	regulatory region 584655			within coordinates
Rr584656	regulatory region 584656			786 bp proximal
Tssr35522	transcription start site region 35522			20 bp upstream