rs30513990 SNP Detail

Summary

• ID
  rs30513990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126432975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCATCTTA CCCACTCCCT
  GTCTGCTAGA ATAGTGCTGT AGCTCTCTAA GGTTGTCAGG GGGGCAGAGG AAAGCTCAGT
  AACTAGGCAA CAAATAGAAG AAAAGTCTGG AACCGGACCA AAGTTTGCCA GCACTTTCAT
  CTTTTCCTTT GAGTAGAGAC ACTCCAGAAA TTCAGTCCAT GGCCGGGGAG CTATTTATAG
  Y
  ATTACATGAT TCTGGAGGAA TTCATTCCCA CAGTTTGCTT GCTGACCGCT AGAGTACTTT
  GGAAGCCTTC AGGTTATTAT ATAGCATTAT GTGGACCACC TAAAATGTGA GCTGCTACCC
  TCAGGAAAGG AAAATGCAGA GGCCCCTGGC CTCTACCTAT ACTGTACTAC ACTCTGTCTA
  GTATAGTAAC CTTGTGATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45521604	mCV23466099	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C		C
ss46956043	NES10676488	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	T		T	C	C	C		T	C	C	T		C
ss135837655	ENSMUSSNP1552449	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss320946888	CHEV_3_126342244	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30513990					SNP	T	T	T	C	T	C	T	C	T	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956043	NES10676488	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126432975 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			469 bp distal
Rr584664	regulatory region 584664			within coordinates
Rr584665	regulatory region 584665			1285 bp proximal
Rr584666	regulatory region 584666			1918 bp proximal