rs30513988 SNP Detail

Summary

• ID
  rs30513988
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126432907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTCTTTC CATAGCTTAG
  TTCTTCCATT AGAATCAATC CATTCAAACA GACGAATTAC GGATACACAT TCATCTTACC
  CACTCCCTGT CTGCTAGAAT AGTGCTGTAG CTCTCTAAGG TTGTCAGGGG GGCAGAGGAA
  AGCTCAGTAA CTAGGCAACA AATAGAAGAA AAGTCTGGAA CCGGACCAAA GTTTGCCAGC
  W
  CTTTCATCTT TTCCTTTGAG TAGAGACACT CCAGAAATTC AGTCCATGGC CGGGGAGCTA
  TTTATAGCAT TACATGATTC TGGAGGAATT CATTCCCACA GTTTGCTTGC TGACCGCTAG
  AGTACTTTGG AAGCCTTCAG GTTATTATAT AGCATTATGT GGACCACCTA AAATGTGAGC
  TGCTACCCTC AGGAAAGGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46956041	NES10676487	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30513988					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956041	NES10676487	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126432907 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			401 bp distal
Rr584664	regulatory region 584664			within coordinates
Rr584665	regulatory region 584665			1353 bp proximal
Rr584666	regulatory region 584666			1986 bp proximal