rs30513532 SNP Detail

Summary

• ID
  rs30513532
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126401122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCAAAAA AAAAAAAAAA
  AAAGAAAGAA AGAAAGAAGG AAAGGAAAGG AAAGGAAAGG AAAGGAAAGG AAAGGAAAGG
  AAAGGAAGAA AGAAAAGAAA GTGATAGAGT GAGTATTTCA AACCAGTTTC TCTTACTCTG
  AAGTCTGAAT CCATTTTTTC CCCATGGGCT GCTGAACTCT GCTGTATTTG TTTGTATGAG
  Y
  GTGGCTCCAT ACCCCTTTTT ACATTTCCAT GGCCTCCAGG GTCTTGAGTG GTACATTTCA
  GAAAATACAT TTAGAATTCC AACTTGTGAG GAAAGAACAT TTTAATTGCC ATGGTAACAT
  AAGATCAAGT TGAAGTTTCA GGCGGCTCTT TGCGACTTTC TAGAAGGAAA AATCCTAGAG
  TGGGAAATGT TATCAAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46955543	NES10678166	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30513532					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955543	NES10678166	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126401122 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			within coordinates
Rr584652	regulatory region 584652			1714 bp proximal
Rr584653	regulatory region 584653			1925 bp proximal
Tssr31576	transcription start site region 31576			352 bp downstream