rs30513413 SNP Detail

Summary

• ID
  rs30513413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126405421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGAAACT GAATTAGCAC
  TGGGGCTGCT GGTACTGAGC TCTGGGTTCT GAGCTCTATG GAGAGGTCAG GGAGACGTCT
  CCAAGGAGCC GGTGTTTGCA CTGGGTTTTG AAAATAAGCA ATGTTGAATA GACAGATAGG
  ACACCAACAG ATAGGACATT ACGAGAAACT ACTCGTGAGG AACAATCAAA TCAGAAAGTG
  Y
  CAGTGAATGG TTTGGTGGTC ATGAAAGCCT GCAGAGCCCG ATGAAGGGAG TTGGAATTCT
  TTTCACCCTC TGAGAGTGAA TCATGAAGTG GCAGGCTCTG TGGGAACGAA GGAAGGAAGG
  AAGGAAGGAA GGTTGATCCC GAGATTTATA GCCCTGAGTC ATTAGGGGTA AACAGCTGAT
  AAGAGAGCCA CAGCAAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955643	NES10677978	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	C	C	C	C		T	C	C	C		C
ss135837067	ENSMUSSNP3275640	ENSEMBL	ENSEMBL_Sanger	f	SNP								C
ss320946682	CHEV_3_126314690	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30513413					SNP	T	T	C	T	C	T	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955643	NES10677978	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126405421 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr397995	regulatory region 397995			1725 bp upstream
Rr584653	regulatory region 584653			1874 bp distal
Rr584654	regulatory region 584654			553 bp distal
Rr584655	regulatory region 584655			within coordinates
Rr584656	regulatory region 584656			926 bp proximal
Tssr35522	transcription start site region 35522			90 bp downstream