rs30513411 SNP Detail

Summary

• ID
  rs30513411
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126405386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAAAGT CTTTCCTCTC
  AAGGTGAACG GACCCAGAGG AAACTGAATT AGCACTGGGG CTGCTGGTAC TGAGCTCTGG
  GTTCTGAGCT CTATGGAGAG GTCAGGGAGA CGTCTCCAAG GAGCCGGTGT TTGCACTGGG
  TTTTGAAAAT AAGCAATGTT GAATAGACAG ATAGGACACC AACAGATAGG ACATTACGAG
  R
  AACTACTCGT GAGGAACAAT CAAATCAGAA AGTGCCAGTG AATGGTTTGG TGGTCATGAA
  AGCCTGCAGA GCCCGATGAA GGGAGTTGGA ATTCTTTTCA CCCTCTGAGA GTGAATCATG
  AAGTGGCAGG CTCTGTGGGA ACGAAGGAAG GAAGGAAGGA AGGAAGGTTG ATCCCGAGAT
  TTATAGCCCT GAGTCATTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955641	NES10677977	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	G	A	A	A		G	A	A	G		G
ss135837064	ENSMUSSNP6625084	ENSEMBL	ENSEMBL_Sanger	f	SNP								A
ss320946681	CHEV_3_126314655	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30513411					SNP	G	G	A	G	A	G	G	A	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955641	NES10677977	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126405386 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr397995	regulatory region 397995			1760 bp upstream
Rr584653	regulatory region 584653			1839 bp distal
Rr584654	regulatory region 584654			518 bp distal
Rr584655	regulatory region 584655			within coordinates
Rr584656	regulatory region 584656			961 bp proximal
Tssr35522	transcription start site region 35522			125 bp downstream