rs30513407 SNP Detail

Summary

• ID
  rs30513407
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126405339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTCCTTG CCAAGCCCCC
  TCCCTCTGAC AGATAACTAA AGAGGGAGAG GCAAAGTCTT TCCTCTCAAG GTGAACGGAC
  CCAGAGGAAA CTGAATTAGC ACTGGGGCTG CTGGTACTGA GCTCTGGGTT CTGAGCTCTA
  TGGAGAGGTC AGGGAGACGT CTCCAAGGAG CCGGTGTTTG CACTGGGTTT TGAAAATAAG
  M
  AATGTTGAAT AGACAGATAG GACACCAACA GATAGGACAT TACGAGAAAC TACTCGTGAG
  GAACAATCAA ATCAGAAAGT GCCAGTGAAT GGTTTGGTGG TCATGAAAGC CTGCAGAGCC
  CGATGAAGGG AGTTGGAATT CTTTTCACCC TCTGAGAGTG AATCATGAAG TGGCAGGCTC
  TGTGGGAACG AAGGAAGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955637	NES10677975	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30513407					SNP	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955637	NES10677975	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126405339 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr397995	regulatory region 397995			1807 bp upstream
Rr584653	regulatory region 584653			1792 bp distal
Rr584654	regulatory region 584654			471 bp distal
Rr584655	regulatory region 584655			within coordinates
Rr584656	regulatory region 584656			1008 bp proximal
Tssr35522	transcription start site region 35522			172 bp downstream