rs30512901 SNP Detail

Summary

• ID
  rs30512901
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126421490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGATGTA AGCAACATCA
  CCTCTCACAG TGGCTCGTGA TGATATCATA AGAAAGCGTC CACATTTCCT GACTATTAGA
  AAGTATTGGG AAGGTCCCAA GTCACAAGCC TGGCTCTATG ACAATACAGT TGTGGGTATT
  GATGAACTTA TAGAAGAAAC ATGTTCCCCC TTGCGATAGG TGTTTGCATT TTGGCAGAAG
  K
  TACTTTACCC AGAAAAGTTG AAATATGAGA TAGATAGCTA ATACTATTTG CGAGTTTCTC
  AGCGAAATAT TTTTAAAATG TAGAAAAGAC TTGCTGTCAT TCATGCAAGG TGTTTTCATC
  TTAGAAAACT ACTCATAGCT TTTAGAAGCA GCCCGTCCCT ACCAAATCAA ATGACCACGA
  ACAGGAGAGA CAGCTCCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955931	NES10677237	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30512901					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955931	NES10677237	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126421490 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			within coordinates
Rr584659	regulatory region 584659			1927 bp distal
Rr584660	regulatory region 584660			594 bp proximal