rs30512897 SNP Detail

Summary

• ID
  rs30512897
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126421144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGAAAAG AATCAAGTCA
  ATTGGTGAAT GTATTGAAAT TGATGACCTA AAAAAGTCTG AGGGACAGAT GCATGGGTTT
  TAACACTCAA GTATTTTAAG TATATGGTAC CACAATGACT GTTAATAAAT GATTTTCTAT
  TGTGGTTATA AGTCTTTATC AATCAAGTGT TAACAGGAAT CAGGAAAGAT AGGAAAGGAA
  W
  GTATAAACAC AGTAAGGTAG ACAGGGCTGT ACCAGTGATA TGAAGATAAA GAAGTTGAAA
  ATTTTTGTCA AGTGTTCTCT GCGTAGAGCA AGGGTCAGGT AGGTGAGATG GACCAAAGAA
  CAAGGAGAGG GTTTTCTTGT GTGGAACACG ATGTAAGCAA CATCACCTCT CACAGTGGCT
  CGTGATGATA TCATAAGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955927	NES10677234	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30512897					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955927	NES10677234	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126421144 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			within coordinates
Rr584659	regulatory region 584659			1581 bp distal
Rr584660	regulatory region 584660			940 bp proximal