rs30512890 SNP Detail

Summary

• ID
  rs30512890
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126432637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCTTGAG CTGCACACCT
  GTCCCAGTCA ATGAAGACTT ACTGGCTTTC ATGTTGCTTT CCAGTAACTA AATGTCACCC
  ACTTTAATCA CGTCATGGTC ATCTTTTTTG CTTGTTTTTA ATGACACAAT TTAATAAAAA
  ACATGAATAA GTCTTTCCAA AGTATTCTAA TTTATAAATG TACCGAAATA CGGGCGTTAT
  S
  AACCCTTCTC TCTAAGACTT GGTGGGTTAC AAAGACTGGC TCTTGGAATG GTTTCCTCCC
  AGATATGCTA ATTTCTTTCC ATAGCTTAGT TCTTCCATTA GAATCAATCC ATTCAAACAG
  ACGAATTACG GATACACATT CATCTTACCC ACTCCCTGTC TGCTAGAATA GTGCTGTAGC
  TCTCTAAGGT TGTCAGGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46956031	NES10676477	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30512890					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956031	NES10676477	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126432637 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			131 bp distal
Rr584664	regulatory region 584664			within coordinates
Rr584665	regulatory region 584665			1623 bp proximal