rs30512885 SNP Detail

Summary

• ID
  rs30512885
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126432437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTAAGTTC
  AGTTGCATGA CTAAAAAAAG CAAAGTTTGT TGTTTGTAAG GGACATTGAC TGATATAGAG
  CATTGAGTAA CCTTAGGATC ATAGACTTTG TATTTATAAC TTCAGTTCCT TGGTTTTCAT
  TCCTTCAGCC TTAAAGAACA CTTCCCATAC CTCAGCTTCT GCCAGATGTG ACGTGGGTGC
  R
  TGCCTTGAGC TGCACACCTG TCCCAGTCAA TGAAGACTTA CTGGCTTTCA TGTTGCTTTC
  CAGTAACTAA ATGTCACCCA CTTTAATCAC GTCATGGTCA TCTTTTTTGC TTGTTTTTAA
  TGACACAATT TAATAAAAAA CATGAATAAG TCTTTCCAAA GTATTCTAAT TTATAAATGT
  ACCGAAATAC GGGCGTTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45520551	mCV23466112	ABI	CRAMUS_MOUSE	f	SNP		A						G
ss46956025	NES10676471	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	G	G	G	G		A	G	G	G		G
ss135837643	ENSMUSSNP2538373	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss320946884	CHEV_3_126341706	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30512885					SNP	A	A	G	A	G	A	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46956025	NES10676471	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126432437 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Rr584663	regulatory region 584663			within coordinates
Rr584664	regulatory region 584664			195 bp proximal
Rr584665	regulatory region 584665			1823 bp proximal