rs30512521 SNP Detail

Summary

• ID
  rs30512521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126404933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTCCAGT TTTACTTAAA
  ATTACAACAC ATCCCTGTGT TGTGGAAATT CCTTTGAACT CTGAAGAACT GCACCCTGCT
  TCGCCGAGGA AGTGAACACC AGCTGGTTAT TTTATAGGGT TGCATGCATC TTTCTGTTAA
  CTTGTGCCCT TTACTGCGGA AGATAATAGA TAGAACTGAA AGCACACCTT TGTAAAGTGT
  Y
  TCAGACTTCT GGGTCTTAGG TAGGATTCAC CTAGGAGGAG AAGTCCTGAG ACACAGAGTT
  AAGTGTTTTC AGAATTCTTT GTCACGTTGC TTCCTGGAGG CTTTGTCCAT TTCCACTGAG
  GACATTTAAT TACAGTATGA TACCTAAATT GAATTTTGAA GAACTACATT CTAACTTTCA
  ATTTCATCTT AATGAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955631	NES10677970	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	T	T	T		C	T	T	T		C
ss135837055	ENSMUSSNP3470910	ENSEMBL	ENSEMBL_Sanger	f	SNP							T
ss320946678	CHEV_3_126314202	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30512521					SNP	C	C	T	C	T	C	T	T	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955631	NES10677970	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126404933 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			1876 bp upstream
Rr584652	regulatory region 584652			1887 bp distal
Rr584653	regulatory region 584653			1386 bp distal
Rr584654	regulatory region 584654			65 bp distal
Rr584655	regulatory region 584655			193 bp proximal
Rr584656	regulatory region 584656			1414 bp proximal
Tssr35522	transcription start site region 35522			578 bp downstream